PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01172.1.g00010.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 107aa    MW: 11732.6 Da    PI: 10.1644
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01172.1.g00010.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.2e-274291251
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                  rie+ + rqvtfskRr g+lKKA+ELSvLCdaev +i+fs++ +ly ++s
  Zpz_sc01172.1.g00010.1.sm.mk 42 RIEDATSRQVTFSKRRSGLLKKAFELSVLCDAEVGLIVFSPRSRLYQFPS 91
                                  8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.7543393IPR002100Transcription factor, MADS-box
SMARTSM004326.8E-323392IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-273555IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003589IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-253591IPR002100Transcription factor, MADS-box
PfamPF003191.6E-254289IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-275570IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-277091IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MVATAAMAAE VAPSPEGGDQ IVVEAPDGRK KLGRRGRREM RRIEDATSRQ VTFSKRRSGL  60
LKKAFELSVL CDAEVGLIVF SPRSRLYQFP SAIEYVLPLL PCPSPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_D4e-182892159Myocyte-specific enhancer factor 2A
3mu6_C4e-182892159Myocyte-specific enhancer factor 2A
3mu6_B4e-182892159Myocyte-specific enhancer factor 2A
3mu6_A4e-182892159Myocyte-specific enhancer factor 2A
3p57_J7e-182892159Myocyte-specific enhancer factor 2A
3p57_I7e-182892159Myocyte-specific enhancer factor 2A
3p57_D7e-182892159Myocyte-specific enhancer factor 2A
3p57_C7e-182892159Myocyte-specific enhancer factor 2A
3p57_B7e-182892159Myocyte-specific enhancer factor 2A
3p57_A7e-182892159Myocyte-specific enhancer factor 2A
3kov_J7e-182892159Myocyte-specific enhancer factor 2A
3kov_I7e-182892159Myocyte-specific enhancer factor 2A
3kov_B7e-182892159Myocyte-specific enhancer factor 2A
3kov_A7e-182892159Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983814.12e-27PREDICTED: MADS-box transcription factor 56-like
RefseqXP_009618745.12e-27PREDICTED: MADS-box protein SOC1-like
RefseqXP_015161757.11e-27PREDICTED: MADS-box protein SOC1-like isoform X2
RefseqXP_016574679.12e-27PREDICTED: MADS-box protein SOC1
RefseqXP_016574684.12e-27PREDICTED: MADS-box protein SOC1
SwissprotO827437e-29AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLK4AHE27e-29K4AHE2_SETIT; Uncharacterized protein
STRINGSi038299m2e-28(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-25AGAMOUS-like 19